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This study explores the effects of year and location on reproductive traits and flowering phenology in Retama raetam populations growing in a hyper-arid environment. Besides year, season, and location, variations in the soil seed bank were also evaluated. Germination percentage of seeds buried in soil at two different depths for one year was determined. I hypothesized that changes in water availability between years and locations would lead to variations in reproductive traits, flowering phenology, and the seed bank of R. raetam. The study was conducted at a midstream and an upstream location during 2013 and 2014 in Wadi Rishrash in the Eastern Desert of Egypt. Flower, fruit, and seed production were significantly higher in the midstream location than the upstream location and in 2014 than in 2013. Flowering onset and duration did not differ significantly between locations. Flowering occurred earlier in 2014 than in 2013 at both locations, and the flowering period was longer in 2014 than in 2013. The size of the seed bank was greater at the midstream than at the upstream location, and in summer than in spring season. Germination of seeds decreased with burial depth, but increased with burial duration. Larger individuals produced more seeds and flowered earlier than smaller plants. The size of plant was also positively correlated with flowering duration. The location and temporal variations in all these traits may be related to environmental differences between locations and differences in annual precipitation.