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Changing climate patterns strongly influence marine ecosystems across the Pacific Arctic region creating significant ecosystem transitions and change. Macrobenthic species are essential prey for numerous marine mammals and seabirds but the influence of climatic drivers that control macrobenthic community population dynamics are poorly known in critical prey habitats. We investigated associations of environmental, temporal, and climatic covariates with the biomass concentrations of six prey groups (Actinopterygii, Amphipoda, Bivalvia, Cumacea, Isopoda, and Polychaeta) in essential habitats for Korean-Okhotsk (western) gray whales adjacent to northeastern Sakhalin Island in the Sea of Okhotsk. Prey community biomass concentrations were correlated with water depth, year, and climate indices reflecting oceanographic and climatic patterns associated with macro-scale climatological effects. The correlation of prey biomass with water depth and year accounted for similar to 90% of total variation in canonical correlation analyses (CCor). Climate indices accounted for similar to 10% of total variation in CCor. Water circulation in winter may be particularly important for maintaining populations through the advection of particulate organic carbon entrained in winter currents. Overall, temporal trends in the biomass concentrations of gray whale prey resources appear to reflect climatic and oceanographic factors that are driving ecosystem changes across the Sea of Okhotsk and the Pacific Arctic region.