globalchange  > 过去全球变化的重建
DOI: 10.5705/ss.202017.0482
WOS记录号: WOS:000474560000005
论文题名:
SPATIAL JOINT SPECIES DISTRIBUTION MODELING USING DIRICHLET PROCESSES
作者: Shirota, Shinichiro1; Gelfand, Alan E.2; Banerjee, Sudipto1
通讯作者: Shirota, Shinichiro
刊名: STATISTICA SINICA
ISSN: 1017-0405
EISSN: 1996-8507
出版年: 2019
卷: 29, 期:3, 页码:1127-1154
语种: 英语
英文关键词: Dimension reduction ; Gaussian processes ; high-dimensional covariance matrix ; spatial factor model ; species dependence
WOS关键词: CLIMATE-CHANGE ; DIMENSION REDUCTION ; BAYESIAN MODEL ; MULTIVARIATE ; INFERENCE ; COOCCURRENCE ; PATTERNS ; HABITAT ; TREE
WOS学科分类: Statistics & Probability
WOS研究方向: Mathematics
英文摘要:

Species distribution models usually attempt to explain the presence-absence or abundance of a species at a site in terms of the environmental features (so-called abiotic features) present at the site. Historically, such models have considered species individually. However, it is well established that species interact to influence the presence-absence and abundance (envisioned as biotic factors). As a result, recently joint species distribution models with various types of responses, such as presence-absence, continuous, and ordinal data have attracted a significant amount of interest. Such models incorporate the dependence between species' responses as a proxy for interaction. We address the accommodation of such modeling in the context of a large number of species (e.g., order 10(2)) across sites numbering in the order of 10(2) or 10(3) when, in practice, only a few species are found at any observed site. To do so, we adopt a dimension-reduction approach. The novelty of our approach is that we add spatial dependence. That is, we consider a collection of sites over a relatively small spatial region. As such, we anticipate that the species distribution at a given site will be similar to that at a nearby site. Specifically, we handle dimension reduction using Dirichlet processes, which enables the clustering of species, and add spatial dependence across sites using Gaussian processes. We use simulated data and a plant communities data set for the Cape Floristic Region (CFR) of South Africa to demonstrate our approach. The latter consists of presence-absence measurements for 639 tree species at 662 locations. These two examples demonstrate the improved predictive performance of our method using the aforementioned specification.


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被引频次[WOS]:12   [查看WOS记录]     [查看WOS中相关记录]
资源类型: 期刊论文
标识符: http://119.78.100.158/handle/2HF3EXSE/141509
Appears in Collections:过去全球变化的重建

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作者单位: 1.Univ Calif Los Angeles, Dept Biostat, 650 Charles E Young Dr, South Los Angeles, CA 90095 USA
2.Duke Univ, Dept Stat, Durham, NC 27708 USA

Recommended Citation:
Shirota, Shinichiro,Gelfand, Alan E.,Banerjee, Sudipto. SPATIAL JOINT SPECIES DISTRIBUTION MODELING USING DIRICHLET PROCESSES[J]. STATISTICA SINICA,2019-01-01,29(3):1127-1154
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